X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.629312% (w/v) PEG 4000, 100mM NH4Ac, 100mM NaAc/HAc pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.5465.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 146.69α = 90
b = 88.11β = 111.1
c = 73.55γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCD2008-02-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.11.8BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.846.0797.20.1390.1395.63211176
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.9596.20.430.4323

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3FBX2.846.0720907107296.540.224230.22290.24921RANDOM32.212
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.920.08-5.066.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.745
r_dihedral_angle_3_deg15.437
r_dihedral_angle_4_deg15.319
r_dihedral_angle_1_deg5.207
r_angle_refined_deg0.983
r_nbtor_refined0.304
r_nbd_refined0.187
r_symmetry_vdw_refined0.134
r_xyhbond_nbd_refined0.122
r_symmetry_hbond_refined0.097
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.745
r_dihedral_angle_3_deg15.437
r_dihedral_angle_4_deg15.319
r_dihedral_angle_1_deg5.207
r_angle_refined_deg0.983
r_nbtor_refined0.304
r_nbd_refined0.187
r_symmetry_vdw_refined0.134
r_xyhbond_nbd_refined0.122
r_symmetry_hbond_refined0.097
r_chiral_restr0.069
r_bond_refined_d0.005
r_gen_planes_refined0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4220
Nucleic Acid Atoms
Solvent Atoms160
Heterogen Atoms107

Software

Software
Software NamePurpose
SCALAdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction