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Structure of Glucose 6-phosphate Isomerase from Staphylococcus aureus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 298 1.4M Sodium Citrate, 0.1M Hepes pH 7.5, 10mM Glucose-6-Phosphate, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.44 64.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 163.267 α = 90 b = 163.267 β = 90 c = 103.732 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARMOSAIC 300 mm CCD 2008-10-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 0.97931 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 50 98.2 0.108 16.711 7.7 1674949 164480 1.8 3.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 85.9 0.401 5.1 14189
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.65 46.22 164376 8278 98.19 0.148 0.146 0.1453 0.17 0.1684 RANDOM 19.399
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.886 r_dihedral_angle_4_deg 17.674 r_dihedral_angle_3_deg 12.239 r_dihedral_angle_1_deg 5.643 r_scangle_it 3.544 r_scbond_it 2.403 r_mcangle_it 2.237 r_angle_refined_deg 1.621 r_mcbond_it 1.348 r_chiral_restr 0.127
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.886 r_dihedral_angle_4_deg 17.674 r_dihedral_angle_3_deg 12.239 r_dihedral_angle_1_deg 5.643 r_scangle_it 3.544 r_scbond_it 2.403 r_mcangle_it 2.237 r_angle_refined_deg 1.621 r_mcbond_it 1.348 r_chiral_restr 0.127 r_bond_refined_d 0.019 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7042 Nucleic Acid Atoms Solvent Atoms 1405 Heterogen Atoms 20
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction BLU-MAX data collection HKL-2000 data reduction HKL-2000 data scaling SHARP phasing