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Complex of UNG2 and a fragment-based designed inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 295 1 microliter of the solution:
0.001 M UNG2 0.05 M TRIS-OAC pH 7.0 0.15 M NACL 0.001 M DTT 0.005 M inhibitor, was mixed with equal amount of the solution containing
0.16 M KSCN AND 22% PEG 3350 , VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.01 38.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.014 α = 90 b = 68.476 β = 90 c = 69.674 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2008-09-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A 1.1 NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.26 50 81 0.056 5.4 45064
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.26 1.31 16.5 0.275 1.3 900
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.27 27.08 45025 2283 80.91 0.176 0.174 0.171 0.207 0.2049 RANDOM 18.334
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 0.44 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.289 r_dihedral_angle_4_deg 21.581 r_dihedral_angle_3_deg 12.718 r_dihedral_angle_1_deg 5.686 r_scangle_it 3.032 r_scbond_it 1.885 r_angle_refined_deg 1.441 r_mcangle_it 1.2 r_mcbond_it 0.651 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.289 r_dihedral_angle_4_deg 21.581 r_dihedral_angle_3_deg 12.718 r_dihedral_angle_1_deg 5.686 r_scangle_it 3.032 r_scbond_it 1.885 r_angle_refined_deg 1.441 r_mcangle_it 1.2 r_mcbond_it 0.651 r_nbtor_refined 0.313 r_nbd_refined 0.215 r_symmetry_vdw_refined 0.204 r_xyhbond_nbd_refined 0.158 r_symmetry_hbond_refined 0.147 r_chiral_restr 0.092 r_metal_ion_refined 0.035 r_bond_refined_d 0.01 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1829 Nucleic Acid Atoms Solvent Atoms 495 Heterogen Atoms 32
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing