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Crystal structure of S118A mutant 3CLSP of PRRSV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.7 291 0.1M sodium citrate pH 5.7, 0.7M ammonium phosphate monobasic, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.52 51.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.256 α = 90 b = 48.578 β = 110.36 c = 42.918 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2008-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.01 50 98.9 0.049 0.049 47.073 5.2 14566 14566
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.01 2.08 96.3 0.169 0.169 11.8 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.01 44.19 13823 730 98.89 0.18201 0.18021 0.1793 0.21466 0.2125 RANDOM 29.06
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.742 r_dihedral_angle_4_deg 19.67 r_dihedral_angle_3_deg 13.436 r_dihedral_angle_1_deg 6.624 r_scangle_it 4.611 r_scbond_it 2.927 r_mcangle_it 1.98 r_angle_refined_deg 1.529 r_mcbond_it 1.208 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.742 r_dihedral_angle_4_deg 19.67 r_dihedral_angle_3_deg 13.436 r_dihedral_angle_1_deg 6.624 r_scangle_it 4.611 r_scbond_it 2.927 r_mcangle_it 1.98 r_angle_refined_deg 1.529 r_mcbond_it 1.208 r_nbtor_refined 0.306 r_nbd_refined 0.196 r_symmetry_vdw_refined 0.172 r_symmetry_hbond_refined 0.151 r_xyhbond_nbd_refined 0.122 r_chiral_restr 0.108 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1392 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms 5
Software Software Software Name Purpose CrystalClear data collection AMoRE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling