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X-ray Co-Crystal Structure of Glycogen Synthase Kinase 3beta in Complex with an Inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 105 PEG 3350, 0.2M proline, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.26 62.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.622 α = 90 b = 117.23 β = 102.71 c = 67.351 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2006-07-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.0 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 94.6 0.056 17.433 2.6 37996
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 95.7 0.511 2.4 3829
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.4 30 37843 1890 94.59 0.206 0.203 0.1962 0.253 0.2441 RANDOM 30.561
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1 -1.11 2.25 -1.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.607 r_mcangle_it 3.005 r_scangle_it 2.981 r_scbond_it 2.07 r_mcbond_it 1.861 r_angle_refined_deg 1.314 r_nbd_refined 0.201 r_symmetry_hbond_refined 0.189 r_xyhbond_nbd_refined 0.159 r_symmetry_vdw_refined 0.154
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.607 r_mcangle_it 3.005 r_scangle_it 2.981 r_scbond_it 2.07 r_mcbond_it 1.861 r_angle_refined_deg 1.314 r_nbd_refined 0.201 r_symmetry_hbond_refined 0.189 r_xyhbond_nbd_refined 0.159 r_symmetry_vdw_refined 0.154 r_chiral_restr 0.076 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5416 Nucleic Acid Atoms Solvent Atoms 232 Heterogen Atoms 50
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection AMoRE phasing