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X-ray Structure of H5N1 NS1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 298 pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.33 47.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.122 α = 90 b = 106.122 β = 90 c = 69.63 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 35 6721 6721
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 35 6721 6721 669 99.88 0.281 0.281 0.279 0.2753 0.296 0.297 RANDOM 50.422
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.59 0.29 0.59 -0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.825 r_dihedral_angle_3_deg 16.693 r_dihedral_angle_4_deg 16.488 r_dihedral_angle_1_deg 5.953 r_scangle_it 2.547 r_scbond_it 1.65 r_angle_refined_deg 1.497 r_mcangle_it 1.072 r_mcbond_it 0.824 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.825 r_dihedral_angle_3_deg 16.693 r_dihedral_angle_4_deg 16.488 r_dihedral_angle_1_deg 5.953 r_scangle_it 2.547 r_scbond_it 1.65 r_angle_refined_deg 1.497 r_mcangle_it 1.072 r_mcbond_it 0.824 r_nbtor_refined 0.302 r_symmetry_vdw_refined 0.26 r_symmetry_hbond_refined 0.233 r_nbd_refined 0.229 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.101 r_bond_refined_d 0.016 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1469 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose d*TREK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction