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Crystal Structure of hTHEM2(undecan-2-one-CoA) complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2F0X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 15% PEG3350, 0.1M ammonium citrate, dibasic, 5-10% glycerol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.35 47.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.032 α = 90 b = 110.632 β = 90 c = 119.819 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2007-11-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 99.1 134034
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 99.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2F0X 1.7 20.73 125902 6645 98.85 0.20051 0.19861 0.1974 0.23701 0.2365 RANDOM 27.255
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.53 1.17 0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.317 r_dihedral_angle_3_deg 14.988 r_dihedral_angle_4_deg 14.179 r_dihedral_angle_1_deg 5.59 r_scangle_it 3.17 r_scbond_it 2.118 r_angle_refined_deg 1.821 r_mcangle_it 1.444 r_mcbond_it 0.85 r_chiral_restr 0.651
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.317 r_dihedral_angle_3_deg 14.988 r_dihedral_angle_4_deg 14.179 r_dihedral_angle_1_deg 5.59 r_scangle_it 3.17 r_scbond_it 2.118 r_angle_refined_deg 1.821 r_mcangle_it 1.444 r_mcbond_it 0.85 r_chiral_restr 0.651 r_nbtor_refined 0.296 r_nbd_refined 0.218 r_symmetry_vdw_refined 0.198 r_symmetry_hbond_refined 0.172 r_xyhbond_nbd_refined 0.14 r_bond_refined_d 0.019 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8223 Nucleic Acid Atoms Solvent Atoms 850 Heterogen Atoms 527
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling