X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.528320% PEG 4000, 0.25 M KBr, 10 mM DTT, 0.1 M MES pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 283K
Crystal Properties
Matthews coefficientSolvent content
2.1542.77

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.04α = 90
b = 204.11β = 113.14
c = 43.07γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2008-02-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-D0.91841APS21-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1240.899.64.44019140191
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0997.94.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT236.913812738127201399.620.217990.217990.215540.26428RANDOM19.427
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.791.79-1.22-0.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.637
r_dihedral_angle_4_deg18.247
r_dihedral_angle_3_deg14.763
r_dihedral_angle_1_deg6.008
r_scangle_it2.728
r_mcangle_it1.939
r_scbond_it1.805
r_angle_refined_deg1.205
r_mcbond_it1.067
r_angle_other_deg0.774
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.637
r_dihedral_angle_4_deg18.247
r_dihedral_angle_3_deg14.763
r_dihedral_angle_1_deg6.008
r_scangle_it2.728
r_mcangle_it1.939
r_scbond_it1.805
r_angle_refined_deg1.205
r_mcbond_it1.067
r_angle_other_deg0.774
r_mcbond_other0.151
r_chiral_restr0.068
r_bond_refined_d0.009
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4729
Nucleic Acid Atoms
Solvent Atoms190
Heterogen Atoms18

Software

Software
Software NamePurpose
MAR345data collection
SHARPphasing
REFMACrefinement
XDSdata reduction
SCALAdata scaling