3F45

Structure of the R75A mutant of rat alpha-Parvalbumin


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP62903.2 Ammonium sulfate, 2% PEG 600, 100mM MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties
Matthews coefficientSolvent content
1.77673830.772001

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 27.315α = 90
b = 55.05β = 105.56
c = 28.768γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHosmic mirrors2005-10-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU1.542

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1227.7197.50.0473.856212

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRTHROUGHOUTPDB ENTRY 1RTP227.715621548025197.540.1580.147260.144360.20485RANDOM12.078
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.878
r_dihedral_angle_3_deg13.568
r_dihedral_angle_1_deg5.909
r_scangle_it3.551
r_scbond_it2.492
r_angle_refined_deg1.595
r_mcangle_it1.426
r_mcbond_it0.908
r_nbtor_refined0.306
r_nbd_refined0.225
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.878
r_dihedral_angle_3_deg13.568
r_dihedral_angle_1_deg5.909
r_scangle_it3.551
r_scbond_it2.492
r_angle_refined_deg1.595
r_mcangle_it1.426
r_mcbond_it0.908
r_nbtor_refined0.306
r_nbd_refined0.225
r_symmetry_hbond_refined0.217
r_xyhbond_nbd_refined0.188
r_symmetry_vdw_refined0.165
r_metal_ion_refined0.105
r_chiral_restr0.096
r_bond_refined_d0.016
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms822
Nucleic Acid Atoms
Solvent Atoms155
Heterogen Atoms12

Software

Software
Software NamePurpose
EPMRphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling