3F3Y

Crystal structure of human cytosolic sulfotransferase SULT2A1 in complex with PAP and lithocholic acid


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
172930.05M Calcium chloride, 18% PEG 3350, 0.1 M Hepes pH 7.0, 10% Ethylene Glycol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2545.28

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 79.393α = 90
b = 96.179β = 90
c = 159.298γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152008-07-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-IDAPS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
123097.60.1410.1414.95.18090729.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
22.0785.60.5270.5272.163.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.2306078460784126499.10.2380.2360.299RANDOM32.92
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.94-4.176.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.147
r_dihedral_angle_4_deg18.072
r_dihedral_angle_3_deg16.654
r_dihedral_angle_1_deg6.951
r_scangle_it3.481
r_scbond_it2.392
r_mcangle_it1.666
r_angle_refined_deg1.416
r_mcbond_it1.023
r_nbtor_refined0.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.147
r_dihedral_angle_4_deg18.072
r_dihedral_angle_3_deg16.654
r_dihedral_angle_1_deg6.951
r_scangle_it3.481
r_scbond_it2.392
r_mcangle_it1.666
r_angle_refined_deg1.416
r_mcbond_it1.023
r_nbtor_refined0.32
r_nbd_refined0.237
r_symmetry_vdw_refined0.201
r_symmetry_hbond_refined0.194
r_xyhbond_nbd_refined0.178
r_chiral_restr0.101
r_bond_refined_d0.018
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9173
Nucleic Acid Atoms
Solvent Atoms538
Heterogen Atoms216

Software

Software
Software NamePurpose
HKL-3000data collection
PHASERphasing
REFMACrefinement
Cootmodel building
HKL-2000data reduction
HKL-2000data scaling