☰ Navigation Tabs
Crystal structure of the catalytic domain of human MMP12 complexed with the inhibitor 4-fluoro-N-(2-hydroxyethyl)-N-(2-nitroso-2-oxoethyl)benzenesulfonamide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 0.1M TRIS, 30% PEG 6000, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.18 43.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.709 α = 90 b = 60.326 β = 115.07 c = 53.992 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2005-01-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 1.00800 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 40 93.5 0.064 0.064 12.6 2.9 53715 53715 7.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.1 1.16 71 0.303 0.303 4.1 2.7 4054
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.13 30.16 48791 48791 4923 100 0.16781 0.16781 0.1659 0.1651 0.18691 0.1869 RANDOM 12.906
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 -0.04 0.01 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.29 r_dihedral_angle_3_deg 10.461 r_dihedral_angle_1_deg 5.681 r_dihedral_angle_4_deg 4.459 r_sphericity_bonded 2.187 r_scangle_it 2.136 r_sphericity_free 2.075 r_scbond_it 1.726 r_angle_refined_deg 1.482 r_rigid_bond_restr 1.371
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.29 r_dihedral_angle_3_deg 10.461 r_dihedral_angle_1_deg 5.681 r_dihedral_angle_4_deg 4.459 r_sphericity_bonded 2.187 r_scangle_it 2.136 r_sphericity_free 2.075 r_scbond_it 1.726 r_angle_refined_deg 1.482 r_rigid_bond_restr 1.371 r_mcangle_it 1.118 r_mcbond_it 0.704 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.192 r_nbd_refined 0.187 r_chiral_restr 0.171 r_xyhbond_nbd_refined 0.113 r_symmetry_hbond_refined 0.103 r_metal_ion_refined 0.102 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1238 Nucleic Acid Atoms Solvent Atoms 300 Heterogen Atoms 24
Software Software Software Name Purpose MAR345dtb data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling