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Crystal structure of oxidized D105N Synechocystis sp. PcyA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 293 1.45M Ammonium sulfate, 0.15M NaCl, 0.1M Aacodylate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.57 52.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.845 α = 90 b = 95.554 β = 90 c = 42.69 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-03-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 39.62 97.6 72066
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.33 95.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.3 39.62 72066 69947 3463 97.1 0.17 0.169 0.1676 0.193 0.1918 RANDOM 16.12
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.86 1.14 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.805 r_dihedral_angle_4_deg 13.44 r_dihedral_angle_3_deg 12.46 r_dihedral_angle_1_deg 6.271 r_scangle_it 3.859 r_scbond_it 2.496 r_angle_refined_deg 1.721 r_mcangle_it 1.573 r_mcbond_it 0.894 r_chiral_restr 0.097
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.805 r_dihedral_angle_4_deg 13.44 r_dihedral_angle_3_deg 12.46 r_dihedral_angle_1_deg 6.271 r_scangle_it 3.859 r_scbond_it 2.496 r_angle_refined_deg 1.721 r_mcangle_it 1.573 r_mcbond_it 0.894 r_chiral_restr 0.097 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1933 Nucleic Acid Atoms Solvent Atoms 298 Heterogen Atoms 87
Software Software Software Name Purpose PHASER phasing REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling