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Structure of Methanosarcina barkeri monomethylamine corrinoid protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 PEG 8000, Magnesium acetate, Sodium cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.89 57.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.97 α = 90 b = 77.71 β = 90 c = 100.36 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 4 Double crystal monochromator 2004-01-01 M MAD 2 1 x-ray 93 CCD ADSC QUANTUM 4 Double crystal monochromator 2004-01-01 3 1 x-ray 93 CCD ADSC QUANTUM 4 Double crystal monochromator 2004-01-01
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 1.60296 SSRL BL9-2 2 SYNCHROTRON SSRL BEAMLINE BL9-2 1.333117 SSRL BL9-2 3 SYNCHROTRON SSRL BEAMLINE BL9-2 1.605839 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3 2.56 50 95.3 0.054 16.2 2.8 44512 15833 28.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.56 2.65 75.9 0.198 3.8 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.56 45.58 15144 1436 91.4 0.205 0.205 0.199 0.262 0.2625 RANDOM 46.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 19.79 -10.78 -9.01
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 19.3 c_scangle_it 10.55 c_scbond_it 8.54 c_mcangle_it 7.25 c_improper_angle_d 7.09 c_mcbond_it 5.23 c_angle_deg 1.3 c_bond_d 0.008 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 19.3 c_scangle_it 10.55 c_scbond_it 8.54 c_mcangle_it 7.25 c_improper_angle_d 7.09 c_mcbond_it 5.23 c_angle_deg 1.3 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1578 Nucleic Acid Atoms Solvent Atoms 95 Heterogen Atoms 91
Software Software Software Name Purpose ADSC data collection SOLVE phasing CNS refinement DENZO data reduction SCALEPACK data scaling