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CDK-2 with indazole inhibitor 17 bound at its active site
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 291 14% PEG 4K, 50mM Hepes pH 7.5, 50mM ammonium acetate, 10 mM DTT, vapor diffusion, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.06 40.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.763 α = 90 b = 72.081 β = 90 c = 72.392 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV Osmic Blue Mirrors 2007-06-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 18.79 22762 22591
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.9 18.79 22591 1159 99.12 0.208 0.206 0.2126 0.243 0.2471 RANDOM 44.822
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.3 2.44 -1.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.722 r_dihedral_angle_4_deg 15.182 r_dihedral_angle_3_deg 13.867 r_dihedral_angle_1_deg 5.618 r_scangle_it 2.196 r_scbond_it 1.407 r_angle_refined_deg 1.298 r_mcangle_it 1.268 r_angle_other_deg 0.821 r_mcbond_it 0.737
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.722 r_dihedral_angle_4_deg 15.182 r_dihedral_angle_3_deg 13.867 r_dihedral_angle_1_deg 5.618 r_scangle_it 2.196 r_scbond_it 1.407 r_angle_refined_deg 1.298 r_mcangle_it 1.268 r_angle_other_deg 0.821 r_mcbond_it 0.737 r_symmetry_vdw_refined 0.3 r_symmetry_vdw_other 0.279 r_nbd_refined 0.218 r_symmetry_hbond_refined 0.2 r_nbtor_refined 0.196 r_nbd_other 0.186 r_xyhbond_nbd_refined 0.133 r_mcbond_other 0.113 r_nbtor_other 0.083 r_chiral_restr 0.066 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2201 Nucleic Acid Atoms Solvent Atoms 189 Heterogen Atoms 68
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction