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Crystal structure of rhizavidin-biotin complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 20% PEG 6000, 0.1M bis-tris, 0.15M NaCl, 10mM sodium phsophate, 3mM DTT., pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.654 α = 90 b = 130.035 β = 90 c = 237.555 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315 2007-09-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.9794 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 98.7 31739 31739
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.38 92.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 50 31739 30099 1608 98.71 0.2177 0.2177 0.21319 0.2125 0.30432 0.3006 RANDOM 48.002
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.83 -2.08 -2.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.603 r_dihedral_angle_3_deg 16.58 r_dihedral_angle_4_deg 14.889 r_dihedral_angle_1_deg 7.715 r_scangle_it 2.954 r_scbond_it 1.976 r_angle_refined_deg 1.744 r_mcangle_it 1.704 r_mcbond_it 0.99 r_symmetry_hbond_refined 0.349
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.603 r_dihedral_angle_3_deg 16.58 r_dihedral_angle_4_deg 14.889 r_dihedral_angle_1_deg 7.715 r_scangle_it 2.954 r_scbond_it 1.976 r_angle_refined_deg 1.744 r_mcangle_it 1.704 r_mcbond_it 0.99 r_symmetry_hbond_refined 0.349 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.236 r_nbd_refined 0.227 r_xyhbond_nbd_refined 0.165 r_chiral_restr 0.121 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6002 Nucleic Acid Atoms Solvent Atoms 122 Heterogen Atoms 112
Software Software Software Name Purpose HKL-2000 data collection AMoRE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling