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CRYSTAL STRUCTURE OF A PUTATIVE PHOSPHOSUGAR ISOMERASE (BSU32610) FROM BACILLUS SUBTILIS AT 1.90 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 277 15.0% Glycerol, 0.1700M NH4OAc, 25.5% PEG-4000, 0.1M Citrate pH 5.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.03 39.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.857 α = 109.3 b = 91.822 β = 100.45 c = 119.041 γ = 96.55
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-07-17 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97908,0.97864 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 29.975 97.1 0.079 0.079 7.179 2 179677 18.965
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 95.9 0.42 0.42 1.6 2 13117
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 29.975 179676 8990 97.07 0.17 0.168 0.1746 0.212 0.2163 RANDOM 23.585
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.2 0.93 -0.04 0.14 -0.11 -1.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.154 r_dihedral_angle_4_deg 15.965 r_dihedral_angle_3_deg 11.465 r_scangle_it 2.976 r_dihedral_angle_1_deg 2.835 r_scbond_it 2.101 r_angle_refined_deg 1.647 r_angle_other_deg 1.165 r_mcangle_it 1.098 r_mcbond_it 0.789
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.154 r_dihedral_angle_4_deg 15.965 r_dihedral_angle_3_deg 11.465 r_scangle_it 2.976 r_dihedral_angle_1_deg 2.835 r_scbond_it 2.101 r_angle_refined_deg 1.647 r_angle_other_deg 1.165 r_mcangle_it 1.098 r_mcbond_it 0.789 r_symmetry_vdw_refined 0.252 r_symmetry_hbond_refined 0.235 r_nbd_refined 0.21 r_symmetry_vdw_other 0.206 r_xyhbond_nbd_refined 0.194 r_mcbond_other 0.191 r_nbtor_refined 0.185 r_nbd_other 0.182 r_xyhbond_nbd_other 0.164 r_nbtor_other 0.095 r_chiral_restr 0.088 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 20474 Nucleic Acid Atoms Solvent Atoms 1702 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction SHELXD phasing autoSHARP phasing