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X-ray Structure of the Metal-sensor CnrX in both the Apo- and Copper-bound Forms
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 20% PEG 2000 MME, 10% Glycerol, pH 7.5, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.34 47.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.94 α = 90 b = 77.89 β = 90.17 c = 93.2 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-06-22 SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97961 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.742 46.6 97.7 0.037 0.037 14.152 6.3 45563
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.74 1.84 93.8 0.263 0.263 3 6 6354
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.742 40 43242 2294 97.48 0.1989 0.19566 0.25894 0.2627 RANDOM 19.949
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 -0.05 2.24 -2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.068 r_dihedral_angle_4_deg 23.914 r_dihedral_angle_3_deg 16.997 r_dihedral_angle_1_deg 8.173 r_scangle_it 5.9 r_scbond_it 4.213 r_angle_refined_deg 2.393 r_mcangle_it 2.173 r_mcbond_it 2.037 r_angle_other_deg 1.262
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.068 r_dihedral_angle_4_deg 23.914 r_dihedral_angle_3_deg 16.997 r_dihedral_angle_1_deg 8.173 r_scangle_it 5.9 r_scbond_it 4.213 r_angle_refined_deg 2.393 r_mcangle_it 2.173 r_mcbond_it 2.037 r_angle_other_deg 1.262 r_mcbond_other 0.538 r_symmetry_vdw_other 0.329 r_symmetry_hbond_refined 0.303 r_nbd_refined 0.248 r_xyhbond_nbd_refined 0.227 r_nbd_other 0.221 r_nbtor_refined 0.175 r_chiral_restr 0.157 r_symmetry_vdw_refined 0.125 r_nbtor_other 0.097 r_bond_refined_d 0.032 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3460 Nucleic Acid Atoms Solvent Atoms 441 Heterogen Atoms 3
Software Software Software Name Purpose SCALA data scaling SHARP phasing SOLOMON phasing REFMAC refinement PDB_EXTRACT data extraction XSCALE data scaling