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Complex of PI3K gamma with an inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1E8Z PDB ENTRY 1e8z
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 288 17% PEG 4000, 0.25M ammonium sulphate, 0.1M Tris pH 7.5, VAPOR DIFFUSION, temperature 288K
Crystal Properties Matthews coefficient Solvent content 2.37 48.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.302 α = 90 b = 68.244 β = 95.19 c = 106.069 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Torroidal Mirror 2005-01-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9793 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 62.14 99.3 0.07 6.8 3.7 40149 40149 51.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 99.3 0.36 0.36 2 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1e8z 2.4 57.07 40148 1636 99.28 0.229 0.227 0.2278 0.276 0.2713 RANDOM 26.414
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.59 1.44 2.86 -2.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.023 r_scangle_it 2.586 r_scbond_it 1.582 r_angle_refined_deg 1.501 r_mcangle_it 0.939 r_angle_other_deg 0.892 r_mcbond_it 0.512 r_symmetry_vdw_refined 0.28 r_nbd_other 0.224 r_symmetry_vdw_other 0.219
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.023 r_scangle_it 2.586 r_scbond_it 1.582 r_angle_refined_deg 1.501 r_mcangle_it 0.939 r_angle_other_deg 0.892 r_mcbond_it 0.512 r_symmetry_vdw_refined 0.28 r_nbd_other 0.224 r_symmetry_vdw_other 0.219 r_nbd_refined 0.211 r_xyhbond_nbd_refined 0.197 r_symmetry_hbond_refined 0.098 r_nbtor_other 0.089 r_chiral_restr 0.086 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_gen_planes_other 0.006 r_bond_other_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6845 Nucleic Acid Atoms Solvent Atoms 38 Heterogen Atoms 21
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection AMoRE phasing