3EKH

Calcium-saturated GCaMP2 T116V/K378W mutant monomer


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82980.1 M Magnesium formate dihydrate, 15% w/v Polyethylene glycol 3,350, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.5565.32

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 121.648α = 90
b = 121.648β = 90
c = 97.327γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2008-07-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 31-ID0.9793APS31-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1225.91000.09614.149827
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.111000.6014.713.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 3EK8223.4147172254699.920.196010.19450.22378RANDOM26.794
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.210.21-0.42
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.779
r_dihedral_angle_4_deg17.944
r_dihedral_angle_3_deg13.964
r_dihedral_angle_1_deg5.938
r_scangle_it3.265
r_scbond_it2.169
r_mcangle_it1.557
r_angle_refined_deg1.332
r_mcbond_it1.036
r_angle_other_deg0.864
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.779
r_dihedral_angle_4_deg17.944
r_dihedral_angle_3_deg13.964
r_dihedral_angle_1_deg5.938
r_scangle_it3.265
r_scbond_it2.169
r_mcangle_it1.557
r_angle_refined_deg1.332
r_mcbond_it1.036
r_angle_other_deg0.864
r_symmetry_vdw_other0.24
r_symmetry_vdw_refined0.208
r_nbd_refined0.203
r_nbd_other0.189
r_mcbond_other0.178
r_nbtor_refined0.171
r_xyhbond_nbd_refined0.17
r_symmetry_hbond_refined0.142
r_metal_ion_refined0.135
r_nbtor_other0.102
r_chiral_restr0.078
r_bond_refined_d0.011
r_gen_planes_refined0.007
r_bond_other_d0.005
r_gen_planes_other0.004
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3152
Nucleic Acid Atoms
Solvent Atoms277
Heterogen Atoms10

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
SCALAdata scaling