X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52980.2 M lithium sulfate monohydrate, 0.1 M Tris-HCl pH 8.5, 30%(w/v) polyethylene glycol 4000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
1.9938.06

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 126.131α = 90
b = 47.31β = 100.48
c = 68.94γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2008-07-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 31-ID0.9793APS31-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8567.7398.490.0767.536788
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.997.60.425.17.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entries 1EMA and 1CDL1.8520.6732223171498.490.191290.188710.24052RANDOM20.837
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.09-0.570.6-0.73
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.391
r_dihedral_angle_4_deg17.07
r_dihedral_angle_3_deg15.393
r_dihedral_angle_1_deg6.199
r_scangle_it4.699
r_scbond_it3.2
r_mcangle_it1.991
r_angle_refined_deg1.735
r_mcbond_it1.404
r_angle_other_deg0.986
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.391
r_dihedral_angle_4_deg17.07
r_dihedral_angle_3_deg15.393
r_dihedral_angle_1_deg6.199
r_scangle_it4.699
r_scbond_it3.2
r_mcangle_it1.991
r_angle_refined_deg1.735
r_mcbond_it1.404
r_angle_other_deg0.986
r_symmetry_hbond_refined0.527
r_mcbond_other0.316
r_symmetry_vdw_other0.274
r_nbd_refined0.218
r_nbd_other0.199
r_nbtor_refined0.178
r_metal_ion_refined0.154
r_xyhbond_nbd_refined0.15
r_symmetry_vdw_refined0.148
r_nbtor_other0.111
r_chiral_restr0.097
r_bond_refined_d0.018
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.002
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3105
Nucleic Acid Atoms
Solvent Atoms198
Heterogen Atoms4

Software

Software
Software NamePurpose
SCALAdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
DENZOdata reduction
SCALEPACKdata scaling