☰ Navigation Tabs
Crystal structure of DesKC in complex with AMP-PCP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 PEG8000, MES, pH 6.5, vapor diffusion, hanging drop, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.41 48.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.8 α = 90 b = 44.7 β = 103 c = 131.45 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 torodial focusing mirror 2007-11-16 SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9793 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 26.7 99.1 0.11 15927 54.042
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.1 3.2 99.4 0.444 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.1 15 15773 816 99.24 0.245 0.242 0.2822 0.297 0.3264 RANDOM 59.423
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.24 3.65 -0.13 4.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.231 r_dihedral_angle_3_deg 22.443 r_dihedral_angle_4_deg 19.701 r_dihedral_angle_1_deg 6.058 r_scangle_it 2.771 r_scbond_it 1.677 r_angle_refined_deg 1.654 r_mcangle_it 0.984 r_mcbond_it 0.851 r_chiral_restr 0.105
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.231 r_dihedral_angle_3_deg 22.443 r_dihedral_angle_4_deg 19.701 r_dihedral_angle_1_deg 6.058 r_scangle_it 2.771 r_scbond_it 1.677 r_angle_refined_deg 1.654 r_mcangle_it 0.984 r_mcbond_it 0.851 r_chiral_restr 0.105 r_bond_refined_d 0.024 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3950 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms 77
Software Software Software Name Purpose XSCALE data scaling SHARP phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction