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The crystal structure of the GAF domain/HD domain protein from Geobacter sulfurreducens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 289 0.2M CaCl2, 0.1M Tris, 20%(w/v)PEG4000, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.15 42.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.453 α = 90 b = 79.471 β = 90 c = 112.632 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2007-08-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 64.96 98.07 0.112 24.57 6.1 28838 28282 2 2 20
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.847 90.48 0.519 1.12 3 2228
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 64.96 28838 28282 1504 98.07 0.20183 0.19984 0.2149 0.24131 0.2553 RANDOM 19.627
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.35 0.54 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.344 r_dihedral_angle_4_deg 14.968 r_dihedral_angle_3_deg 14.311 r_dihedral_angle_1_deg 5.855 r_scangle_it 4.764 r_scbond_it 3.042 r_mcangle_it 1.938 r_angle_refined_deg 1.701 r_mcbond_it 1.046 r_angle_other_deg 0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.344 r_dihedral_angle_4_deg 14.968 r_dihedral_angle_3_deg 14.311 r_dihedral_angle_1_deg 5.855 r_scangle_it 4.764 r_scbond_it 3.042 r_mcangle_it 1.938 r_angle_refined_deg 1.701 r_mcbond_it 1.046 r_angle_other_deg 0.96 r_mcbond_other 0.305 r_chiral_restr 0.1 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2415 Nucleic Acid Atoms Solvent Atoms 99 Heterogen Atoms 36
Software Software Software Name Purpose SBC-Collect data collection HKL-3000 phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling