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Kap95p Binding Induces the Switch Loops of RanGDP to adopt the GTP-bound Conformation: Implications for Nuclear Import Complex Assembly Dynamics
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.1 298 17% PEG 4000
0.1 M MES (pH 6.1)
10 mM MgCl2
125 mM NaCl
12% MPD
5 mg/ml GDP, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.55 51.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.85 α = 90 b = 127.81 β = 90 c = 171.79 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2006-01-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 30 99.9 0.105 12.2 14.6 85035
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 98.8 0.585 3.5 14.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 20 80539 4240 99.98 0.19167 0.18942 0.1928 0.23231 0.2334 RANDOM 56.138
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 -0.09 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.677 r_dihedral_angle_4_deg 20.416 r_dihedral_angle_3_deg 18.688 r_dihedral_angle_1_deg 5.407 r_scangle_it 5.175 r_mcangle_it 4.506 r_scbond_it 3.729 r_mcbond_it 3.659 r_angle_refined_deg 1.371 r_angle_other_deg 0.994
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.677 r_dihedral_angle_4_deg 20.416 r_dihedral_angle_3_deg 18.688 r_dihedral_angle_1_deg 5.407 r_scangle_it 5.175 r_mcangle_it 4.506 r_scbond_it 3.729 r_mcbond_it 3.659 r_angle_refined_deg 1.371 r_angle_other_deg 0.994 r_mcbond_other 0.949 r_metal_ion_refined 0.461 r_nbd_refined 0.234 r_symmetry_hbond_refined 0.218 r_symmetry_vdw_other 0.194 r_nbd_other 0.193 r_xyhbond_nbd_refined 0.193 r_nbtor_refined 0.187 r_xyhbond_nbd_other 0.136 r_symmetry_vdw_refined 0.132 r_nbtor_other 0.091 r_chiral_restr 0.077 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16004 Nucleic Acid Atoms Solvent Atoms 364 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection d*TREK data reduction d*TREK data scaling PHASES phasing