☰ Navigation Tabs
Arabidopsis thaliana acetohydroxyacid synthase in complex with monosulfuron-ester
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YBH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9.4 291 0.1M CHES, 0.2M Li2SO4, 1M potassium sodium tartrate, 1mM ThDP, 1mM FAD, 1mM MgCl2, 5mM DTT, 1mM MSE , pH 9.4, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 178.468 α = 90 b = 178.468 β = 90 c = 184.948 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 MIRRORS 2005-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 1.00 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 58.42 98.7 0.075 0.075 20.1 5.8 42923 42923
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 96.4 0.315 0.315 5.3 4060
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1YBH 2.8 58.42 40611 40611 2153 98.53 0.19969 0.19969 0.19895 0.1922 0.21348 0.2061 RANDOM 52.026
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 0.09 0.19 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.918 r_dihedral_angle_4_deg 17.658 r_dihedral_angle_3_deg 15.789 r_dihedral_angle_1_deg 5.36 r_scangle_it 1.492 r_angle_refined_deg 1.153 r_scbond_it 0.846 r_mcangle_it 0.653 r_mcbond_it 0.363 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.918 r_dihedral_angle_4_deg 17.658 r_dihedral_angle_3_deg 15.789 r_dihedral_angle_1_deg 5.36 r_scangle_it 1.492 r_angle_refined_deg 1.153 r_scbond_it 0.846 r_mcangle_it 0.653 r_mcbond_it 0.363 r_nbtor_refined 0.304 r_nbd_refined 0.191 r_symmetry_vdw_refined 0.175 r_symmetry_hbond_refined 0.129 r_xyhbond_nbd_refined 0.113 r_chiral_restr 0.077 r_metal_ion_refined 0.064 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4456 Nucleic Acid Atoms Solvent Atoms 108 Heterogen Atoms 120
Software Software Software Name Purpose ADSC data collection CCP4 model building REFMAC refinement DENZO data reduction SCALEPACK data scaling CCP4 phasing