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Crystal structure of Calx CBD2 domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 8 0.2 M potassium formate, 10 mM CaCl2, 20% Polyethylene glycol 3350, pH 8.0, EVAPORATION
Crystal Properties Matthews coefficient Solvent content 4.2 70.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.365 α = 90 b = 113.365 β = 90 c = 41.616 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD NOIR-1 2008-04-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 1.000 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 38.32 99.8 0.098 18.9 5.1 10260
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.55 99.9 2.5 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 38.2 10260 540 100 0.25798 0.25703 0.2493 0.27548 0.2648 RANDOM 48.735
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.08 -0.54 -1.08 1.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.272 r_dihedral_angle_3_deg 21.296 r_dihedral_angle_4_deg 19.087 r_dihedral_angle_1_deg 8.75 r_angle_refined_deg 1.761 r_scangle_it 1.261 r_scbond_it 0.721 r_mcangle_it 0.72 r_mcbond_it 0.409 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.272 r_dihedral_angle_3_deg 21.296 r_dihedral_angle_4_deg 19.087 r_dihedral_angle_1_deg 8.75 r_angle_refined_deg 1.761 r_scangle_it 1.261 r_scbond_it 0.721 r_mcangle_it 0.72 r_mcbond_it 0.409 r_nbtor_refined 0.313 r_nbd_refined 0.231 r_symmetry_vdw_refined 0.19 r_symmetry_hbond_refined 0.166 r_chiral_restr 0.165 r_xyhbond_nbd_refined 0.143 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1292 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms
Software Software Software Name Purpose CrystalClear data collection PHASER phasing REFMAC refinement XDS data reduction XDS data scaling