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Structure of a tryptic core fragment of TIGAR from Danio rerio
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 293 1 M potassium sodium tartrate, 100 mM MES, pH 6.5, vapor diffusion, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.04 59.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.672 α = 90 b = 136.672 β = 90 c = 66.753 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2008-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4C 0.979 NSLS X4C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.6 0.058 5.8 47347
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 99.3 0.439 5.8 9353
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 19.92 47347 2406 100 0.172 0.17 0.1698 0.209 0.2086 RANDOM 29.33
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.01 -0.02 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.754 r_dihedral_angle_4_deg 18.68 r_dihedral_angle_3_deg 13.914 r_dihedral_angle_1_deg 5.714 r_scangle_it 3.509 r_scbond_it 2.117 r_mcangle_it 1.384 r_angle_refined_deg 1.162 r_mcbond_it 0.726 r_chiral_restr 0.074
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.754 r_dihedral_angle_4_deg 18.68 r_dihedral_angle_3_deg 13.914 r_dihedral_angle_1_deg 5.714 r_scangle_it 3.509 r_scbond_it 2.117 r_mcangle_it 1.384 r_angle_refined_deg 1.162 r_mcbond_it 0.726 r_chiral_restr 0.074 r_bond_refined_d 0.012 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3160 Nucleic Acid Atoms Solvent Atoms 483 Heterogen Atoms 2
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction