3E6Z

1.0 A Structure of CusF-W44A-Cu(II) residues 10-88 from Escherichia coli


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52980.1 M Tris-HCl pH 8.5, 27.5% PEG 4000, 0.2 M sodium acetate, 2 mM CuCl2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
1.9938.19

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 26.272α = 90
b = 31.615β = 90
c = 84.685γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCD2008-02-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-20.97946SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1125.33960.0446.95358013580135801
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.0390.90.03533.46.44

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 2qcp125.333580135801188696.070.195360.194380.21393RANDOM9.94
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.13-0.070.2
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg45.18
r_dihedral_angle_3_deg13.708
r_dihedral_angle_4_deg8.879
r_dihedral_angle_1_deg6.533
r_sphericity_bonded5.549
r_sphericity_free5.43
r_angle_refined_deg2.315
r_scangle_it1.756
r_mcangle_it1.678
r_scbond_it1.348
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg45.18
r_dihedral_angle_3_deg13.708
r_dihedral_angle_4_deg8.879
r_dihedral_angle_1_deg6.533
r_sphericity_bonded5.549
r_sphericity_free5.43
r_angle_refined_deg2.315
r_scangle_it1.756
r_mcangle_it1.678
r_scbond_it1.348
r_mcbond_it1.333
r_mcbond_other1.332
r_angle_other_deg1.022
r_rigid_bond_restr0.857
r_symmetry_vdw_refined0.331
r_symmetry_vdw_other0.314
r_nbd_refined0.274
r_symmetry_hbond_refined0.266
r_nbd_other0.207
r_nbtor_refined0.165
r_chiral_restr0.148
r_xyhbond_nbd_refined0.145
r_nbtor_other0.099
r_metal_ion_refined0.051
r_bond_refined_d0.03
r_gen_planes_refined0.012
r_gen_planes_other0.005
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms694
Nucleic Acid Atoms
Solvent Atoms97
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
Blu-Icedata collection
CrystalCleardata reduction
SCALAdata scaling
MOLREPphasing