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Structure of hen egg white lysozyme with the magic triangle I3C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 0.1M HEPES, 15%(wt/wt) PEG 3350, 8mM sodium I3C(magic triangle) solution, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.001255 38.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.83 α = 90 b = 76.83 β = 90 c = 38.87 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate MULTI-LAYER OSMIC OPTICS 2007-09-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE MACSCIENCE 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 19.4 99.8 0.069 38.2 26.1 17445 17445
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.65 99.5 0.15 21.2 24
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD FREE R 1.55 19.4 17445 17445 871 99.8 0.173 0.173 0.171 0.1746 0.22 0.1723 RANDOM 11.099
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 3
RMS Deviations Key Refinement Restraint Deviation s_from_restr_planes 0.474 s_similar_adp_cmpnt 0.054 s_non_zero_chiral_vol 0.045 s_zero_chiral_vol 0.043 s_angle_d 0.023 s_anti_bump_dis_restr 0.013 s_bond_d 0.007 s_similar_dist s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 975 Nucleic Acid Atoms Solvent Atoms 147 Heterogen Atoms 79
Software Software Software Name Purpose SHELX refinement PDB_EXTRACT data extraction MAR345 data collection XDS data reduction SADABS data scaling SHELXD phasing SHELXL-97 refinement