☰ Navigation Tabs
Crystal structure of a putative imidazole glycerol phosphate synthase homolog (eubrec_1070) from eubacterium rectale at 1.75 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 30.0000% PEG-6000, 0.1M MES pH 6.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 1.82 32.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.79 α = 90 b = 60.18 β = 98.18 c = 59.86 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-06-15 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-06-23 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97895 SSRL BL11-1 2 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97872, 0.97931, 0.91837 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.75 29.656 99 0.136 0.136 4.5 4.4 36433 13.79
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.75 1.8 97.7 0.537 0.537 1.4 2.5 2660
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.75 29.656 36334 1801 98.51 0.174 0.171 0.1831 0.219 0.225 RANDOM 10.707
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 0.13 1.07 -0.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.228 r_dihedral_angle_4_deg 13.333 r_dihedral_angle_3_deg 8.719 r_scangle_it 5.404 r_scbond_it 3.971 r_dihedral_angle_1_deg 2.741 r_mcangle_it 2.088 r_angle_refined_deg 1.817 r_mcbond_it 1.62 r_angle_other_deg 1.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.228 r_dihedral_angle_4_deg 13.333 r_dihedral_angle_3_deg 8.719 r_scangle_it 5.404 r_scbond_it 3.971 r_dihedral_angle_1_deg 2.741 r_mcangle_it 2.088 r_angle_refined_deg 1.817 r_mcbond_it 1.62 r_angle_other_deg 1.61 r_mcbond_other 0.578 r_nbd_refined 0.179 r_symmetry_hbond_refined 0.171 r_xyhbond_nbd_refined 0.161 r_nbtor_refined 0.158 r_symmetry_vdw_other 0.144 r_nbd_other 0.114 r_chiral_restr 0.099 r_symmetry_vdw_refined 0.085 r_nbtor_other 0.082 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3431 Nucleic Acid Atoms Solvent Atoms 394 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction SHELXD phasing autoSHARP phasing