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The crystal structure of a conserved domain from a protein of Geobacter sulfurreducens PCA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 15%(v/v) ethanol,
0.1M HEPES,
0.2M MgCl., pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.79 55.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.421 α = 90 b = 59.421 β = 90 c = 223.175 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirror 2007-08-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97945, 0.97959 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 42.3 99.5 0.089 23.7 6.2 8896 8896
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.21 97.2 1.7 4.5 834
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.1 42.3 8419 8419 418 99.47 0.21983 0.21983 0.21649 0.217 0.29089 RANDOM 69.019
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.07 -0.14 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.011 r_dihedral_angle_3_deg 23.809 r_dihedral_angle_4_deg 23.015 r_dihedral_angle_1_deg 9.58 r_angle_refined_deg 1.901 r_mcangle_it 1.778 r_scangle_it 1.505 r_mcbond_it 1.004 r_scbond_it 0.923 r_symmetry_vdw_refined 0.359
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.011 r_dihedral_angle_3_deg 23.809 r_dihedral_angle_4_deg 23.015 r_dihedral_angle_1_deg 9.58 r_angle_refined_deg 1.901 r_mcangle_it 1.778 r_scangle_it 1.505 r_mcbond_it 1.004 r_scbond_it 0.923 r_symmetry_vdw_refined 0.359 r_nbtor_refined 0.331 r_nbd_refined 0.285 r_xyhbond_nbd_refined 0.156 r_chiral_restr 0.123 r_symmetry_hbond_refined 0.123 r_bond_refined_d 0.017 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2348 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling SHELXD phasing MLPHARE phasing DM phasing RESOLVE phasing HKL-3000 phasing