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The crystal structure of a Lipase-esterase related protein from Clostridium acetobutylicum ATCC 824
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 0.2M LiCl
20% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.05 39.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.611 α = 90 b = 75.153 β = 97.89 c = 68.206 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirror 2008-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97929 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 38.1 96.3 0.092 28.9 4.2 75965 75965
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.45 1.48 75.8 0.49 2.28 2.8 2968
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.45 38.1 72029 72029 3810 96.08 0.14525 0.14525 0.14318 0.1446 0.18455 RANDOM 15.368
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 -0.01 -0.02 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.864 r_dihedral_angle_4_deg 35.774 r_dihedral_angle_3_deg 11.934 r_sphericity_free 5.259 r_dihedral_angle_1_deg 5.139 r_scangle_it 3.963 r_sphericity_bonded 3.835 r_scbond_it 2.726 r_mcangle_it 1.761 r_rigid_bond_restr 1.544
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.864 r_dihedral_angle_4_deg 35.774 r_dihedral_angle_3_deg 11.934 r_sphericity_free 5.259 r_dihedral_angle_1_deg 5.139 r_scangle_it 3.963 r_sphericity_bonded 3.835 r_scbond_it 2.726 r_mcangle_it 1.761 r_rigid_bond_restr 1.544 r_angle_refined_deg 1.387 r_mcbond_it 1.221 r_nbtor_refined 0.315 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.169 r_symmetry_hbond_refined 0.146 r_xyhbond_nbd_refined 0.132 r_chiral_restr 0.095 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4001 Nucleic Acid Atoms Solvent Atoms 754 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling SHELXD phasing MLPHARE phasing DM phasing RESOLVE phasing HKL-3000 phasing