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Structural and Functional Analysis of SRA domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 100mM Tris-Hcl
1.2M ammonium Sulfate
0.2M NaCl, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.56 51.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.557 α = 90 b = 65.557 β = 90 c = 95.362 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-06-27 M SINGLE WAVELENGTH 2 1 CCD ADSC QUANTUM 210 2008-06-18
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4C NSLS X4C 2 SYNCHROTRON NSLS BEAMLINE X6A NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 20 79 0.083 17595 2 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 98.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.95 20 2 17830 16701 894 98.82 0.20126 0.199 0.19859 0.1988 0.25267 0.2542 RANDOM 19.747
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 0.16 0.32 -0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.986 r_dihedral_angle_4_deg 20.908 r_dihedral_angle_3_deg 14.487 r_dihedral_angle_1_deg 5.424 r_scangle_it 3.952 r_scbond_it 2.597 r_mcangle_it 1.864 r_angle_refined_deg 1.608 r_mcbond_it 1.151 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.986 r_dihedral_angle_4_deg 20.908 r_dihedral_angle_3_deg 14.487 r_dihedral_angle_1_deg 5.424 r_scangle_it 3.952 r_scbond_it 2.597 r_mcangle_it 1.864 r_angle_refined_deg 1.608 r_mcbond_it 1.151 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.243 r_nbd_refined 0.227 r_xyhbond_nbd_refined 0.146 r_symmetry_hbond_refined 0.134 r_chiral_restr 0.116 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1500 Nucleic Acid Atoms Solvent Atoms 131 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing