X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
3.0159.18

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 89.4α = 90
b = 136.25β = 103.06
c = 117.86γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 210MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-11.0ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.146.231000.08417.86.315603731.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.211000.5744.16.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1K9X2.146.2314773439151000.180370.179280.22114RANDOM30.974
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.45-1.47-2.181.97
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.177
r_dihedral_angle_4_deg17.911
r_dihedral_angle_3_deg15.569
r_dihedral_angle_1_deg5.732
r_scangle_it3.287
r_scbond_it2.278
r_angle_refined_deg1.48
r_mcangle_it1.25
r_mcbond_it1.08
r_angle_other_deg0.969
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.177
r_dihedral_angle_4_deg17.911
r_dihedral_angle_3_deg15.569
r_dihedral_angle_1_deg5.732
r_scangle_it3.287
r_scbond_it2.278
r_angle_refined_deg1.48
r_mcangle_it1.25
r_mcbond_it1.08
r_angle_other_deg0.969
r_symmetry_vdw_refined0.298
r_symmetry_vdw_other0.286
r_nbd_refined0.211
r_mcbond_other0.206
r_nbd_other0.195
r_nbtor_refined0.181
r_xyhbond_nbd_refined0.165
r_symmetry_hbond_refined0.16
r_nbtor_other0.09
r_chiral_restr0.089
r_metal_ion_refined0.02
r_bond_refined_d0.016
r_gen_planes_refined0.006
r_bond_other_d0.003
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms16009
Nucleic Acid Atoms
Solvent Atoms1120
Heterogen Atoms132

Software

Software
Software NamePurpose
REFMACrefinement
ADSCdata collection
XDSdata reduction
SCALAdata scaling
AMoREphasing