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The structure of rat cytosolic PEPCK in complex with beta-sulfopyruvate and GTP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop vapor diffusion 7.4 298 12-30% PEG 3350, 0.1M HEPES, 10 MM MNCL2, pH 7.4, hanging drop vapor diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.22 44.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.019 α = 90 b = 119.503 β = 107.07 c = 87.283 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Bent conical Si-mirror (Rh coated) 2007-11-29 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.9 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 100 97.5 0.089 10.7 6.5 187821
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 84.8 0.695 4.6 16291
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.5 29.15 187706 9440 97.34 0.176 0.174 0.182 0.209 0.2139 RANDOM 8.921
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 0.03 0.02 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.627 r_dihedral_angle_4_deg 20.61 r_dihedral_angle_3_deg 14.542 r_dihedral_angle_1_deg 7.282 r_scangle_it 4.38 r_scbond_it 2.759 r_angle_refined_deg 1.746 r_mcangle_it 1.713 r_mcbond_it 1.031 r_chiral_restr 0.134
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.627 r_dihedral_angle_4_deg 20.61 r_dihedral_angle_3_deg 14.542 r_dihedral_angle_1_deg 7.282 r_scangle_it 4.38 r_scbond_it 2.759 r_angle_refined_deg 1.746 r_mcangle_it 1.713 r_mcbond_it 1.031 r_chiral_restr 0.134 r_bond_refined_d 0.019 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9702 Nucleic Acid Atoms Solvent Atoms 999 Heterogen Atoms 113
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection HKL-2000 data reduction HKL-2000 data scaling