☰ Navigation Tabs
Crystal structure of Cu(I) bound copper resistance protein CopK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 0.1M KSCN, 32% PEG MME 2000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.94 36.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.193 α = 90 b = 84.672 β = 90 c = 23.662 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate Osmic mirrors 2008-06-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.54179
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 50 99.1 0.043 0.043 27.1 8.8 9911 22.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.61 93.7 0.129 13.5 6.4 905
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.55 15.8 9875 462 99.32 0.203 0.203 0.2103 0.212 0.2275 RANDOM 30.56
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.54 -0.42 1.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 27.023 r_dihedral_angle_2_deg 26.193 r_dihedral_angle_3_deg 13.2 r_dihedral_angle_1_deg 5.299 r_scangle_it 4.655 r_scbond_it 2.903 r_mcangle_it 2.493 r_mcbond_it 1.66 r_angle_refined_deg 1.582 r_angle_other_deg 0.848
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 27.023 r_dihedral_angle_2_deg 26.193 r_dihedral_angle_3_deg 13.2 r_dihedral_angle_1_deg 5.299 r_scangle_it 4.655 r_scbond_it 2.903 r_mcangle_it 2.493 r_mcbond_it 1.66 r_angle_refined_deg 1.582 r_angle_other_deg 0.848 r_mcbond_other 0.548 r_symmetry_vdw_refined 0.461 r_symmetry_vdw_other 0.377 r_nbd_refined 0.286 r_nbd_other 0.215 r_symmetry_hbond_refined 0.173 r_nbtor_refined 0.168 r_xyhbond_nbd_refined 0.121 r_chiral_restr 0.096 r_nbtor_other 0.086 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 517 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 7
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling SHARP phasing