X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5294PEG 10,000, HEPES buffer, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
2.4249.21

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 68.666α = 90
b = 76.122β = 90
c = 86.502γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCDMirrors2007-08-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-B0.98APS23-ID-B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.750.969912814

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1ASA2.750.961218762398.50.2280.2250.286RANDOM36.425
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.842.65-0.81
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.84
r_dihedral_angle_4_deg14.504
r_dihedral_angle_3_deg13.898
r_dihedral_angle_1_deg5.691
r_angle_refined_deg0.934
r_angle_other_deg0.743
r_scangle_it0.649
r_scbond_it0.413
r_mcangle_it0.368
r_mcbond_it0.333
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.84
r_dihedral_angle_4_deg14.504
r_dihedral_angle_3_deg13.898
r_dihedral_angle_1_deg5.691
r_angle_refined_deg0.934
r_angle_other_deg0.743
r_scangle_it0.649
r_scbond_it0.413
r_mcangle_it0.368
r_mcbond_it0.333
r_nbd_refined0.193
r_nbtor_refined0.174
r_nbd_other0.164
r_symmetry_vdw_other0.162
r_xyhbond_nbd_refined0.129
r_symmetry_vdw_refined0.124
r_nbtor_other0.081
r_chiral_restr0.057
r_mcbond_other0.029
r_bond_refined_d0.006
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2879
Nucleic Acid Atoms
Solvent Atoms9
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing