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Crystal structure of FabOX108
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 32C2 PDB entry 32C2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 2M Ammonium sulfate, 5% v/v Isopropanol, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.28 46.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.225 α = 90 b = 52.142 β = 103.14 c = 112.123 γ = 90
Symmetry Space Group P 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-11-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.87260 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 98.1 0.101 16.3 5.3 39870 -1.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.38 83.2 0.649 1.5 3.2 3322
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 32C2 2.3 30 37098 1947 98.63 0.19027 0.18736 0.2299 0.24615 0.2152 RANDOM 43.909
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.32 -0.82 -0.18 -1.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.58 r_dihedral_angle_4_deg 16.29 r_dihedral_angle_3_deg 13.755 r_scangle_it 7.107 r_dihedral_angle_1_deg 5.87 r_scbond_it 5.27 r_mcangle_it 4.297 r_mcbond_it 3.352 r_angle_refined_deg 1.061 r_mcbond_other 0.839
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.58 r_dihedral_angle_4_deg 16.29 r_dihedral_angle_3_deg 13.755 r_scangle_it 7.107 r_dihedral_angle_1_deg 5.87 r_scbond_it 5.27 r_mcangle_it 4.297 r_mcbond_it 3.352 r_angle_refined_deg 1.061 r_mcbond_other 0.839 r_angle_other_deg 0.766 r_nbd_other 0.186 r_nbd_refined 0.175 r_nbtor_refined 0.172 r_symmetry_vdw_other 0.17 r_symmetry_hbond_refined 0.143 r_xyhbond_nbd_refined 0.14 r_symmetry_vdw_refined 0.14 r_nbtor_other 0.082 r_chiral_restr 0.062 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6603 Nucleic Acid Atoms Solvent Atoms 367 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement MAR345 data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing