☰ Navigation Tabs
The structure of CT381, the arginine binding protein from the periplasm Chlamydia trachomatis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 293 Sodium Formate 0.5M-4M, Tris Base 100mM, pH 6.8-8.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.81 67.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.072 α = 90 b = 121.875 β = 95.38 c = 170.097 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97995 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 55 99.5 0.086 0.086 13.8 4.1 123164 2.1 21.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.92 2.02 96.6 0.48 0.48 2.1 3.7 17384
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.92 30 2 2 123129 121860 1237 99.48 0.196 0.19584 0.2183 0.2133 0.2366 RANDOM 5.549
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.43 0.22 0.44 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.252 r_dihedral_angle_4_deg 21.834 r_dihedral_angle_3_deg 14.211 r_dihedral_angle_1_deg 5.538 r_scangle_it 2.047 r_scbond_it 1.199 r_angle_refined_deg 1.127 r_mcangle_it 0.496 r_mcbond_it 0.339 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.252 r_dihedral_angle_4_deg 21.834 r_dihedral_angle_3_deg 14.211 r_dihedral_angle_1_deg 5.538 r_scangle_it 2.047 r_scbond_it 1.199 r_angle_refined_deg 1.127 r_mcangle_it 0.496 r_mcbond_it 0.339 r_nbtor_refined 0.295 r_symmetry_vdw_refined 0.21 r_nbd_refined 0.184 r_xyhbond_nbd_refined 0.158 r_symmetry_hbond_refined 0.149 r_chiral_restr 0.076 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7372 Nucleic Acid Atoms Solvent Atoms 1284 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction SCALA data scaling SHELXS phasing