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Crystal structure of a cbs domain-containing protein in complex with amp (sso3205) from sulfolobus solfataricus at 1.80 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 3.76 293 23.0% polyethylene glycol 600, 0.1M phosphate-citrate pH 3.76, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.32 46.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.56 α = 90 b = 48.09 β = 93.83 c = 83.28 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-05-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.617 99.1 0.047 17.67 28983 -3 24.648
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 93.2 0.529 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 29.617 28971 1469 99.27 0.17 0.168 0.1727 0.206 0.2095 RANDOM 21.676
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.79 -0.98 1.87 -1.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.593 r_dihedral_angle_4_deg 19.712 r_dihedral_angle_3_deg 13.295 r_scangle_it 6.626 r_dihedral_angle_1_deg 5.671 r_scbond_it 4.807 r_mcangle_it 2.995 r_mcbond_it 2.259 r_angle_refined_deg 1.509 r_angle_other_deg 0.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.593 r_dihedral_angle_4_deg 19.712 r_dihedral_angle_3_deg 13.295 r_scangle_it 6.626 r_dihedral_angle_1_deg 5.671 r_scbond_it 4.807 r_mcangle_it 2.995 r_mcbond_it 2.259 r_angle_refined_deg 1.509 r_angle_other_deg 0.97 r_mcbond_other 0.545 r_symmetry_vdw_refined 0.239 r_symmetry_vdw_other 0.218 r_nbd_refined 0.204 r_nbd_other 0.19 r_nbtor_refined 0.172 r_xyhbond_nbd_refined 0.169 r_symmetry_hbond_refined 0.142 r_nbtor_other 0.087 r_chiral_restr 0.082 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2183 Nucleic Acid Atoms Solvent Atoms 283 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing