☰ Navigation Tabs
Crystal structure of 4-(trifluoromethyldiazirinyl)phenylalanyl-tRNA synthetase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 5% PEG8K, 10-20% PEG300, 9% glycerol, 100 mM Tris-HCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.66 53.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.155 α = 90 b = 104.155 β = 90 c = 70.826 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2007-02-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.0 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 98.6 19257 18987 2 5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.258 84.09
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 38.92 2 19257 18987 1021 98.6 0.197 0.19689 0.19323 0.1927 0.26959 0.269 RANDOM 57.529
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.06 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.819 r_dihedral_angle_3_deg 20.858 r_dihedral_angle_4_deg 13.943 r_dihedral_angle_1_deg 7.048 r_scangle_it 6.524 r_scbond_it 4.181 r_mcangle_it 2.545 r_angle_refined_deg 2.278 r_mcbond_it 1.69 r_symmetry_hbond_refined 0.348
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.819 r_dihedral_angle_3_deg 20.858 r_dihedral_angle_4_deg 13.943 r_dihedral_angle_1_deg 7.048 r_scangle_it 6.524 r_scbond_it 4.181 r_mcangle_it 2.545 r_angle_refined_deg 2.278 r_mcbond_it 1.69 r_symmetry_hbond_refined 0.348 r_nbtor_refined 0.321 r_symmetry_vdw_refined 0.299 r_nbd_refined 0.242 r_xyhbond_nbd_refined 0.227 r_chiral_restr 0.169 r_bond_refined_d 0.028 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2499 Nucleic Acid Atoms Solvent Atoms 169 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction SCALA data scaling AMoRE phasing