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Structure of the ROC domain from the Parkinson's disease-associated leucine-rich repeat kinase 2 reveals a dimeric GTPase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 298 30% PEG 4000, 100mM MgCl2, 0.1M Tris, 5mM GTP, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.85 33.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.919 α = 90 b = 53.167 β = 112.76 c = 42.736 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.43 21.09 5109
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION 2.43 21.09 5109 230 93 0.216 0.211 0.2499 0.307 0.3153 33.24
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 0.04 -0.48 0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.602 r_dihedral_angle_3_deg 20.902 r_dihedral_angle_4_deg 14.39 r_dihedral_angle_1_deg 8.302 r_scangle_it 3.375 r_angle_refined_deg 2.342 r_scbond_it 2.3 r_mcangle_it 1.419 r_mcbond_it 0.887 r_nbtor_refined 0.339
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.602 r_dihedral_angle_3_deg 20.902 r_dihedral_angle_4_deg 14.39 r_dihedral_angle_1_deg 8.302 r_scangle_it 3.375 r_angle_refined_deg 2.342 r_scbond_it 2.3 r_mcangle_it 1.419 r_mcbond_it 0.887 r_nbtor_refined 0.339 r_nbd_refined 0.29 r_symmetry_hbond_refined 0.256 r_symmetry_vdw_refined 0.228 r_xyhbond_nbd_refined 0.187 r_chiral_restr 0.113 r_bond_refined_d 0.023 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 994 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms 29
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction