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Crystal structure of mouse PARN in complex with m7GpppG
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2A1R 2A1R 1WHV experimental model PDB 1WHV 2A1R 1WHV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 6~10% PEG6000, 100mM MES, pH6.0, 10mM betaine , VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.82 56.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.013 α = 90 b = 128.35 β = 90 c = 176.844 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.9793 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 103.69 96 0.101 6.9 29592 29592
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.1 96 0.327 2.3 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2A1R
1WHV 3 103.69 24512 1293 94.66 0.30035 0.2986 0.33371 RANDOM 76.434
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.62 -2.58 -2.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.074 r_dihedral_angle_3_deg 21.156 r_dihedral_angle_4_deg 15.684 r_dihedral_angle_1_deg 6.511 r_scangle_it 1.826 r_angle_refined_deg 1.532 r_mcangle_it 1.183 r_scbond_it 1.129 r_mcbond_it 0.649 r_nbtor_refined 0.323
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.074 r_dihedral_angle_3_deg 21.156 r_dihedral_angle_4_deg 15.684 r_dihedral_angle_1_deg 6.511 r_scangle_it 1.826 r_angle_refined_deg 1.532 r_mcangle_it 1.183 r_scbond_it 1.129 r_mcbond_it 0.649 r_nbtor_refined 0.323 r_symmetry_vdw_refined 0.265 r_nbd_refined 0.256 r_symmetry_hbond_refined 0.205 r_xyhbond_nbd_refined 0.197 r_chiral_restr 0.103 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6125 Nucleic Acid Atoms Solvent Atoms 78 Heterogen Atoms 104
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction SCALA data scaling AMoRE phasing