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The Crystal Structure of a putative PTS IIB(PtxB) from Streptococcus mutans
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 289 0.1M MES, 1.5-1.8M (NH4)2SO4, pH 6.5, Vapor diffusion, temperature 289K
Crystal Properties Matthews coefficient Solvent content 1.717724 28.393608
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36 α = 90 b = 41.4 β = 90 c = 54.9 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-07-25 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BSRF BEAMLINE 3W1A 0.981 BSRF 3W1A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 19.4 96 0.025 0.028 58.33 7 5665 -3 21.478
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.3 89 0.04 0.038 42.2 7 3265
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.02 19.37 6711 5401 264 100 0.23 0.1774 0.17454 0.1765 0.23734 0.2427 RANDOM 15.32
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.07 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.739 r_dihedral_angle_3_deg 16.959 r_dihedral_angle_4_deg 12.839 r_dihedral_angle_1_deg 5.432 r_scangle_it 4.768 r_scbond_it 2.99 r_mcangle_it 1.769 r_angle_refined_deg 1.594 r_mcbond_it 1.277 r_nbtor_refined 0.292
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.739 r_dihedral_angle_3_deg 16.959 r_dihedral_angle_4_deg 12.839 r_dihedral_angle_1_deg 5.432 r_scangle_it 4.768 r_scbond_it 2.99 r_mcangle_it 1.769 r_angle_refined_deg 1.594 r_mcbond_it 1.277 r_nbtor_refined 0.292 r_xyhbond_nbd_refined 0.285 r_symmetry_vdw_refined 0.249 r_nbd_refined 0.201 r_symmetry_hbond_refined 0.162 r_chiral_restr 0.105 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 700 Nucleic Acid Atoms Solvent Atoms 59 Heterogen Atoms
Software Software Software Name Purpose XSCALE data scaling SHELX phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XDS data scaling SHELXCD phasing SHELXE model building