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Crystal structure of putative transglycosylase from Caulobacter crescentus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.1M Hepes pH 7.5, 4% 2,2,2-Trifluoroethanol, 1.6M Lithium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.88 57.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 129.604 α = 90 b = 129.604 β = 90 c = 88.74 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-04-01 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 315 2008-04-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.979 APS 31-ID 2 SYNCHROTRON APS BEAMLINE 24-ID-C 0.979 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.5 50 99.9 0.108 6.2 22.5 30161 30161
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.5 2.59 100 0.815 22.6 2951
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 30.43 30123 1544 99.94 0.202 0.199 0.1928 0.25 0.2409 RANDOM 43.037
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.79 0.4 0.79 -1.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.429 r_dihedral_angle_4_deg 19.751 r_dihedral_angle_3_deg 18.635 r_scangle_it 6.254 r_dihedral_angle_1_deg 6.013 r_mcangle_it 5.861 r_scbond_it 4.39 r_mcbond_it 3.94 r_angle_refined_deg 1.403 r_nbtor_refined 0.327
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.429 r_dihedral_angle_4_deg 19.751 r_dihedral_angle_3_deg 18.635 r_scangle_it 6.254 r_dihedral_angle_1_deg 6.013 r_mcangle_it 5.861 r_scbond_it 4.39 r_mcbond_it 3.94 r_angle_refined_deg 1.403 r_nbtor_refined 0.327 r_symmetry_vdw_refined 0.228 r_nbd_refined 0.217 r_xyhbond_nbd_refined 0.197 r_symmetry_hbond_refined 0.191 r_chiral_restr 0.094 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4866 Nucleic Acid Atoms Solvent Atoms 164 Heterogen Atoms 35
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection HKL-2000 data reduction HKL2Map phasing