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Human glutathione s-transferase p1-1 in complex with chlorambucil
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5GSS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.4 277 Resevior solution contained: 25% (w/v) ammonium sulfate, 60mM DTT, 100mM MES and 10% (v/v) glycerol. Solid chlorambucil was streaked into the drop., pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.58 52.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.84 α = 90 b = 89.93 β = 97.7 c = 69.07 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 1997-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 15 89.9 0.043 19 2.4 37091 33345 17.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 87.9 0.235 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 5GSS 1.9 14.92 37465 33344 1654 89.9 0.179 0.179 0.176 0.1763 0.233 0.2345 RANDOM 18.51
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 -0.02 -0.2 -0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.115 r_dihedral_angle_3_deg 16.594 r_dihedral_angle_4_deg 15.037 r_dihedral_angle_1_deg 5.454 r_scangle_it 3.228 r_scbond_it 2.165 r_angle_refined_deg 1.543 r_mcangle_it 1.314 r_mcbond_it 0.883 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.115 r_dihedral_angle_3_deg 16.594 r_dihedral_angle_4_deg 15.037 r_dihedral_angle_1_deg 5.454 r_scangle_it 3.228 r_scbond_it 2.165 r_angle_refined_deg 1.543 r_mcangle_it 1.314 r_mcbond_it 0.883 r_nbtor_refined 0.306 r_symmetry_hbond_refined 0.223 r_symmetry_vdw_refined 0.222 r_nbd_refined 0.202 r_chiral_restr 0.142 r_xyhbond_nbd_refined 0.126 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3276 Nucleic Acid Atoms Solvent Atoms 331 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling X-PLOR phasing