X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.529820 mg/mL ptn, l8% PEG8K, 0.2M ZnAc, 0.1M Cacodylate, pH 6.5, vapor diffusion, hanging drop, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.244.12

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.456α = 90
b = 73.06β = 90
c = 95.347γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERAXISmirrors2007-04-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-0071.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.819.9699.20.05916.84.422927529275
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.8696.10.3022.73.582797

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.9382355223552119499.560.2330.2330.230.289RANDOM17.128
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.16-1.20.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.021
r_dihedral_angle_3_deg17.974
r_dihedral_angle_4_deg11.019
r_dihedral_angle_1_deg6.11
r_scangle_it3.502
r_scbond_it2.519
r_angle_refined_deg1.662
r_mcangle_it1.542
r_mcbond_it1.03
r_nbtor_refined0.293
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.021
r_dihedral_angle_3_deg17.974
r_dihedral_angle_4_deg11.019
r_dihedral_angle_1_deg6.11
r_scangle_it3.502
r_scbond_it2.519
r_angle_refined_deg1.662
r_mcangle_it1.542
r_mcbond_it1.03
r_nbtor_refined0.293
r_symmetry_hbond_refined0.249
r_symmetry_vdw_refined0.227
r_nbd_refined0.217
r_xyhbond_nbd_refined0.165
r_chiral_restr0.107
r_metal_ion_refined0.029
r_bond_refined_d0.018
r_symmetry_metal_ion_refined0.016
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2393
Nucleic Acid Atoms
Solvent Atoms277
Heterogen Atoms4

Software

Software
Software NamePurpose
d*TREKdata scaling
d*TREKdata reduction
REFMACrefinement
PDB_EXTRACTdata extraction
CrystalCleardata collection
XFITdata reduction