☰ Navigation Tabs
Crystal structure of a putative inositol catabolism protein iole (iole, lp_3607) from lactobacillus plantarum wcfs1 at 1.85 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 277 NANODROP, 0.2M (NH4)2H Citrate, 20.0% PEG 3350, No Buffer pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.38 48.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.235 α = 90 b = 51.553 β = 90 c = 246.908 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2008-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97908 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.273 99.4 0.089 12 57200 -3 20.373
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 95.9 0.74 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.85 29.273 57116 2891 99.7 0.167 0.165 0.1707 0.21 0.2138 RANDOM 16.493
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2 -0.55 -1.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.596 r_dihedral_angle_3_deg 12.718 r_dihedral_angle_4_deg 10.57 r_dihedral_angle_1_deg 5.784 r_scangle_it 5.323 r_scbond_it 4.319 r_mcangle_it 2.46 r_mcbond_it 1.888 r_angle_refined_deg 1.398 r_angle_other_deg 0.952
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.596 r_dihedral_angle_3_deg 12.718 r_dihedral_angle_4_deg 10.57 r_dihedral_angle_1_deg 5.784 r_scangle_it 5.323 r_scbond_it 4.319 r_mcangle_it 2.46 r_mcbond_it 1.888 r_angle_refined_deg 1.398 r_angle_other_deg 0.952 r_mcbond_other 0.696 r_symmetry_vdw_other 0.227 r_nbd_refined 0.208 r_nbd_other 0.193 r_nbtor_refined 0.182 r_symmetry_hbond_refined 0.174 r_xyhbond_nbd_refined 0.154 r_symmetry_vdw_refined 0.123 r_chiral_restr 0.094 r_nbtor_other 0.087 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4747 Nucleic Acid Atoms Solvent Atoms 749 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data reduction autoSHARP phasing SHELXD phasing