3CI0

The Crystal Structure of the GspK-GspI-GspJ complex from enterotoxigenic Escherichia coli Type 2 Secretion System


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP529825-30% PEG 3350, 0.1M NA ACETATE (PH 5.0), 0.1M CACL2, vapor diffusion, sitting drop, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.0941.21

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 96.118α = 90
b = 96.118β = 90
c = 108.436γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCD2007-06-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-21.54704SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.236.21000.0780.0785.96.82646446.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.321000.5370.5371.45

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRASTHROUGHOUT2.235.9625040133899.860.194920.191550.25942RANDOM55.68
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.3-1.32.59
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.809
r_dihedral_angle_4_deg15.681
r_dihedral_angle_3_deg14.035
r_dihedral_angle_1_deg6.246
r_scangle_it2.718
r_scbond_it2.031
r_angle_refined_deg1.279
r_mcangle_it1.111
r_angle_other_deg0.896
r_mcbond_it0.822
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.809
r_dihedral_angle_4_deg15.681
r_dihedral_angle_3_deg14.035
r_dihedral_angle_1_deg6.246
r_scangle_it2.718
r_scbond_it2.031
r_angle_refined_deg1.279
r_mcangle_it1.111
r_angle_other_deg0.896
r_mcbond_it0.822
r_symmetry_hbond_refined0.239
r_symmetry_vdw_other0.21
r_nbd_refined0.207
r_symmetry_vdw_refined0.204
r_nbd_other0.2
r_xyhbond_nbd_refined0.178
r_nbtor_refined0.173
r_mcbond_other0.153
r_metal_ion_refined0.141
r_nbtor_other0.084
r_chiral_restr0.074
r_xyhbond_nbd_other0.032
r_bond_refined_d0.013
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4108
Nucleic Acid Atoms
Solvent Atoms190
Heterogen Atoms4

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
SHARPphasing
REFMACrefinement
PDB_EXTRACTdata extraction