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Crystal structure of SC4828, a unique phosphatase from Streptomyces coelicolor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.1 295 0.2M Mg Acetate, 20% PEG 3350, Cryoprotected in paratone-N oil, pH 5.1, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.31 46.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.738 α = 90 b = 77.271 β = 90 c = 80.044 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2006-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97931 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.61 50 97 0.047 33.65 5.7 31979 31979
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.61 1.7 96.6 0.329 2.7 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 19.87 25847 1377 97.77 0.193 0.19079 0.18952 0.1936 0.2147 0.2176 RANDOM 20.25
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 -0.13 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.206 r_dihedral_angle_4_deg 16.744 r_dihedral_angle_3_deg 11.677 r_dihedral_angle_1_deg 6.056 r_scangle_it 3.786 r_scbond_it 2.407 r_mcangle_it 1.591 r_angle_refined_deg 1.448 r_mcbond_it 1.02 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.206 r_dihedral_angle_4_deg 16.744 r_dihedral_angle_3_deg 11.677 r_dihedral_angle_1_deg 6.056 r_scangle_it 3.786 r_scbond_it 2.407 r_mcangle_it 1.591 r_angle_refined_deg 1.448 r_mcbond_it 1.02 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.267 r_nbd_refined 0.209 r_symmetry_hbond_refined 0.173 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.105 r_bond_refined_d 0.03 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1736 Nucleic Acid Atoms Solvent Atoms 319 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling SHELXCD phasing SHELXE model building