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Crystal structure of Mycobacterium tuberculosis Rv3778c protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1C0N PDB ENTRY 1C0N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 298 14.4% PEG 5000, 100mM sodium acetate, 10mM NaCl, 100mM Tris-HCl pH 8.5, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.27 46.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.842 α = 90 b = 81.842 β = 90 c = 115.932 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2005-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.873 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30.95 100 0.138 0.138 3.4 5 70551
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 100 0.48 0.48 1.5 4.8 10295
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1C0N 1.8 30.95 70504 3556 99.97 0.179 0.177 0.215 0.2264 RANDOM 15.258
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.225 r_dihedral_angle_4_deg 19.01 r_dihedral_angle_3_deg 14.617 r_dihedral_angle_1_deg 4.982 r_scangle_it 3.275 r_scbond_it 1.971 r_mcangle_it 1.178 r_angle_refined_deg 1.158 r_mcbond_it 0.692 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.225 r_dihedral_angle_4_deg 19.01 r_dihedral_angle_3_deg 14.617 r_dihedral_angle_1_deg 4.982 r_scangle_it 3.275 r_scbond_it 1.971 r_mcangle_it 1.178 r_angle_refined_deg 1.158 r_mcbond_it 0.692 r_nbtor_refined 0.299 r_nbd_refined 0.198 r_symmetry_vdw_refined 0.187 r_xyhbond_nbd_refined 0.127 r_symmetry_hbond_refined 0.122 r_chiral_restr 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5964 Nucleic Acid Atoms Solvent Atoms 617 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction